Loop J4_4V7K

3D structure

PDB id: 4V7K (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)
Experimental method: X-RAY DIFFRACTION
Resolution: 3.6 Å

Loop

Sequence: CGAG*CGUAG*CGAG*CGCAAGCGGGCCGCACGCGGCCCGCAAAG
Length: 42 nucleotides
Bulged bases: 4V7K|1|AA|A|653, 4V7K|1|AA|A|654, 4V7K|1|AA|C|654|||I, 4V7K|1|AA|A|654|||J, 4V7K|1|AA|C|654|||K, 4V7K|1|AA|G|654|||L, 4V7K|1|AA|C|654|||M, 4V7K|1|AA|G|654|||S
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V7K|1|AA|C|601
4V7K|1|AA|G|602
4V7K|1|AA|A|603
4V7K|1|AA|G|604
*
4V7K|1|AA|C|624
4V7K|1|AA|G|625
4V7K|1|AA|U|626
4V7K|1|AA|A|627
4V7K|1|AA|G|628
*
4V7K|1|AA|C|635
4V7K|1|AA|G|636
4V7K|1|AA|A|637
4V7K|1|AA|G|638
*
4V7K|1|AA|C|650
4V7K|1|AA|G|651
4V7K|1|AA|C|652
4V7K|1|AA|A|653
4V7K|1|AA|A|654
4V7K|1|AA|G|654|||A
4V7K|1|AA|C|654|||B
4V7K|1|AA|G|654|||C
4V7K|1|AA|G|654|||D
4V7K|1|AA|G|654|||E
4V7K|1|AA|C|654|||F
4V7K|1|AA|C|654|||G
4V7K|1|AA|G|654|||H
4V7K|1|AA|C|654|||I
4V7K|1|AA|A|654|||J
4V7K|1|AA|C|654|||K
4V7K|1|AA|G|654|||L
4V7K|1|AA|C|654|||M
4V7K|1|AA|G|654|||N
4V7K|1|AA|G|654|||O
4V7K|1|AA|C|654|||P
4V7K|1|AA|C|654|||Q
4V7K|1|AA|C|654|||R
4V7K|1|AA|G|654|||S
4V7K|1|AA|C|654|||T
4V7K|1|AA|A|654|||U
4V7K|1|AA|A|654|||V
4V7K|1|AA|A|655
4V7K|1|AA|G|656

Current chains

Chain AA: RNA (2848-MER)

Nearby chains

Chain A8: 50S ribosomal protein L35
Chain AF: 50S ribosomal protein L4
Chain AP: 50S ribosomal protein L15

J4_4V7K_003