J4_4V7L_019

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUGGA*UACAAUG*CCCAGUUCGGAUU*AUGAAGCCGGAAUC

Length

40 nucleotides

Bulged bases

4V7L|1|CA|U|1240, 4V7L|1|CA|U|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7L|1|CA|G|941
4V7L|1|CA|G|942
4V7L|1|CA|U|943
4V7L|1|CA|G|944
4V7L|1|CA|G|945
4V7L|1|CA|A|946
*
4V7L|1|CA|U|1235
4V7L|1|CA|A|1236
4V7L|1|CA|C|1237
4V7L|1|CA|A|1238
4V7L|1|CA|A|1239
4V7L|1|CA|U|1240
4V7L|1|CA|G|1241
*
4V7L|1|CA|C|1296
4V7L|1|CA|C|1297
4V7L|1|CA|C|1298
4V7L|1|CA|A|1299
4V7L|1|CA|G|1300
4V7L|1|CA|U|1301
4V7L|1|CA|U|1302
4V7L|1|CA|C|1303
4V7L|1|CA|G|1304
4V7L|1|CA|G|1305
4V7L|1|CA|A|1306
4V7L|1|CA|U|1307
4V7L|1|CA|U|1308
*
4V7L|1|CA|A|1329
4V7L|1|CA|U|1330
4V7L|1|CA|G|1331
4V7L|1|CA|A|1332
4V7L|1|CA|A|1333
4V7L|1|CA|G|1334
4V7L|1|CA|C|1335
4V7L|1|CA|C|1336
4V7L|1|CA|G|1337
4V7L|1|CA|G|1338
4V7L|1|CA|A|1339
4V7L|1|CA|A|1340
4V7L|1|CA|U|1341
4V7L|1|CA|C|1342

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CG

30S ribosomal protein S7

Chain CI

30S ribosomal protein S9

Chain CM

30S ribosomal protein S13

Chain CU

30S ribosomal protein Thx

Chain CX

Transfer RNA; tRNA

Chain CY

Transfer RNA; tRNA