J4_4V7L_022

3D structure

PDB id

4V7L (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structures of viomycin bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UAUCG*CAC*GCUUUCC*GUA

Length

18 nucleotides

Bulged bases

4V7L|1|CY|U|8, 4V7L|1|CY|C|9, 4V7L|1|CY|U|45, 4V7L|1|CY|U|46, 4V7L|1|CY|C|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V7L_022 not in the Motif Atlas

Homologous match to J4_4WT8_030

Geometric discrepancy: 0.4004

The information below is about J4_4WT8_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7L|1|CY|U|6
4V7L|1|CY|A|7
4V7L|1|CY|U|8
4V7L|1|CY|C|9
4V7L|1|CY|G|10
*
4V7L|1|CY|C|24
4V7L|1|CY|A|25
4V7L|1|CY|C|26
*
4V7L|1|CY|G|42
4V7L|1|CY|C|43
4V7L|1|CY|U|44
4V7L|1|CY|U|45
4V7L|1|CY|U|46
4V7L|1|CY|C|47
4V7L|1|CY|C|48
*
4V7L|1|CY|G|64
4V7L|1|CY|U|65
4V7L|1|CY|A|66

Current chains

Chain CY

tRNA-Gln

Nearby chains

Chain CG

30S ribosomal protein S7

Chain CK

30S ribosomal protein S11

Chain D6

50S ribosomal protein L33