3D structure

PDB id
4V7L (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structures of viomycin bound to the 70S ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
ACUCUGCAAGUUGG*UG*CCGCAGUGAACAGG*CGCUGU
Length
36 nucleotides
Bulged bases
4V7L|1|BA|G|1758, 4V7L|1|BA|G|1763, 4V7L|1|BA|G|1992
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V7L|1|BA|A|1669
4V7L|1|BA|C|1670
4V7L|1|BA|U|1671
4V7L|1|BA|C|1672
4V7L|1|BA|U|1673
4V7L|1|BA|G|1674
4V7L|1|BA|C|1675
4V7L|1|BA|A|1676
4V7L|1|BA|A|1677
4V7L|1|BA|G|1678
4V7L|1|BA|U|1679
4V7L|1|BA|U|1680
4V7L|1|BA|G|1681
4V7L|1|BA|G|1682
*
4V7L|1|BA|U|1706
4V7L|1|BA|G|1707
*
4V7L|1|BA|C|1751
4V7L|1|BA|C|1752
4V7L|1|BA|G|1753
4V7L|1|BA|C|1754
4V7L|1|BA|A|1755
4V7L|1|BA|G|1756
4V7L|1|BA|U|1757
4V7L|1|BA|G|1758
4V7L|1|BA|A|1759
4V7L|1|BA|A|1760
4V7L|1|BA|C|1761
4V7L|1|BA|A|1762
4V7L|1|BA|G|1763
4V7L|1|BA|G|1764
*
4V7L|1|BA|C|1988
4V7L|1|BA|G|1989
4V7L|1|BA|C|1990
4V7L|1|BA|U|1991
4V7L|1|BA|G|1992
4V7L|1|BA|U|1993

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain AA
Small subunit ribosomal RNA; SSU rRNA
Chain BE
50S ribosomal protein L3
Chain BO
50S ribosomal protein L14
Chain BT
50S ribosomal protein L19

Coloring options:

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