J4_4V7P_018

3D structure

PDB id

4V7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Recognition of the amber stop codon by release factor RF1.

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGUCUAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V7P_018 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.5166

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

4V7P|1|CA|C|601
4V7P|1|CA|G|602
4V7P|1|CA|A|603
4V7P|1|CA|G|604
*
4V7P|1|CA|C|624
4V7P|1|CA|G|625
4V7P|1|CA|U|626
4V7P|1|CA|A|627
4V7P|1|CA|G|628
*
4V7P|1|CA|C|635
4V7P|1|CA|G|636
4V7P|1|CA|A|637
4V7P|1|CA|G|638
*
4V7P|1|CA|C|650
4V7P|1|CA|G|651
4V7P|1|CA|U|652
4V7P|1|CA|C|653
4V7P|1|CA|U|654
4V7P|1|CA|A|655
4V7P|1|CA|G|656

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C5

50S ribosomal protein L35

Chain CE

50S ribosomal protein L4

Chain CL

50S ribosomal protein L15