3D structure

PDB id
4V7P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Recognition of the amber stop codon by release factor RF1.
Experimental method
X-RAY DIFFRACTION
Resolution
3.62 Å

Loop

Sequence
UUG*CG*CCUAAGGUAG*CGAAAA
Length
21 nucleotides
Bulged bases
4V7P|1|CA|A|1971
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V7P_024 not in the Motif Atlas
Homologous match to J4_9DFE_008
Geometric discrepancy: 0.087
The information below is about J4_9DFE_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_93343.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

4V7P|1|CA|U|1833
4V7P|1|CA|U|1834
4V7P|1|CA|G|1835
*
4V7P|1|CA|C|1905
4V7P|1|CA|G|1906
*
4V7P|1|CA|C|1924
4V7P|1|CA|C|1925
4V7P|1|CA|U|1926
4V7P|1|CA|A|1927
4V7P|1|CA|A|1928
4V7P|1|CA|G|1929
4V7P|1|CA|G|1930
4V7P|1|CA|U|1931
4V7P|1|CA|A|1932
4V7P|1|CA|G|1933
*
4V7P|1|CA|C|1967
4V7P|1|CA|G|1968
4V7P|1|CA|A|1969
4V7P|1|CA|A|1970
4V7P|1|CA|A|1971
4V7P|1|CA|A|1972

Current chains

Chain CA
23S ribosomal RNA

Nearby chains

Chain CC
50S ribosomal protein L2
Chain DA
Small subunit ribosomal RNA; SSU rRNA
Chain DW
Transfer RNA; tRNA

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