3D structure

PDB id
4V7P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Recognition of the amber stop codon by release factor RF1.
Experimental method
X-RAY DIFFRACTION
Resolution
3.62 Å

Loop

Sequence
GACUG*CACAG*CGAC*GUAAC
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V7P_033 not in the Motif Atlas
Homologous match to J4_9DFE_007
Geometric discrepancy: 0.0774
The information below is about J4_9DFE_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61477.5
Basepair signature
cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
Number of instances in this motif group
4

Unit IDs

4V7P|1|CA|G|1772
4V7P|1|CA|A|1773
4V7P|1|CA|C|1774
4V7P|1|CA|U|1775
4V7P|1|CA|G|1776
*
4V7P|1|CA|C|1788
4V7P|1|CA|A|1789
4V7P|1|CA|C|1790
4V7P|1|CA|A|1791
4V7P|1|CA|G|1792
*
4V7P|1|CA|C|1827
4V7P|1|CA|G|1828
4V7P|1|CA|A|1829
4V7P|1|CA|C|1830
*
4V7P|1|CA|G|1975
4V7P|1|CA|U|1976
4V7P|1|CA|A|1977
4V7P|1|CA|A|1978
4V7P|1|CA|C|1979

Current chains

Chain CA
23S ribosomal RNA

Nearby chains

Chain CC
50S ribosomal protein L2
Chain DA
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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