J4_4V7V_016

3D structure

PDB id

4V7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to clindamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

GAG*CAUAACGU*ACCAAAGA*UUGC

Length

23 nucleotides

Bulged bases

4V7V|1|CA|C|183, 4V7V|1|CA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7V|1|CA|G|142
4V7V|1|CA|A|143
4V7V|1|CA|G|144
*
4V7V|1|CA|C|178
4V7V|1|CA|A|179
4V7V|1|CA|U|180
4V7V|1|CA|A|181
4V7V|1|CA|A|182
4V7V|1|CA|C|183
4V7V|1|CA|G|184
4V7V|1|CA|U|185
*
4V7V|1|CA|A|192
4V7V|1|CA|C|193
4V7V|1|CA|C|194
4V7V|1|CA|A|195
4V7V|1|CA|A|196
4V7V|1|CA|A|197
4V7V|1|CA|G|198
4V7V|1|CA|A|199
*
4V7V|1|CA|U|218
4V7V|1|CA|U|219
4V7V|1|CA|G|220
4V7V|1|CA|C|221

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CT

30S ribosomal protein S20