J4_4V7V_018

3D structure

PDB id

4V7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to clindamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

CCAG*CGAUGAGUAG*UGAAUAUG*CAAG

Length

26 nucleotides

Bulged bases

4V7V|1|DA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7V|1|DA|C|268
4V7V|1|DA|C|269
4V7V|1|DA|A|270
4V7V|1|DA|G|271
*
4V7V|1|DA|C|366
4V7V|1|DA|G|367
4V7V|1|DA|A|368
4V7V|1|DA|U|369
4V7V|1|DA|G|370
4V7V|1|DA|A|371
4V7V|1|DA|G|372
4V7V|1|DA|U|373
4V7V|1|DA|A|374
4V7V|1|DA|G|375
*
4V7V|1|DA|U|399
4V7V|1|DA|G|400
4V7V|1|DA|A|401
4V7V|1|DA|A|402
4V7V|1|DA|U|403
4V7V|1|DA|A|404
4V7V|1|DA|U|405
4V7V|1|DA|G|406
*
4V7V|1|DA|C|421
4V7V|1|DA|A|422
4V7V|1|DA|A|423
4V7V|1|DA|G|424

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DH

50S ribosomal protein L9

Chain DX

50S ribosomal protein L28