J4_4V7V_020

3D structure

PDB id

4V7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to clindamycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.29 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

4V7V|1|DA|U|653, 4V7V|1|DA|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V7V_020 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.2839

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

4V7V|1|DA|C|601
4V7V|1|DA|A|602
4V7V|1|DA|A|603
4V7V|1|DA|G|604
*
4V7V|1|DA|C|624
4V7V|1|DA|G|625
4V7V|1|DA|A|626
4V7V|1|DA|A|627
4V7V|1|DA|G|628
*
4V7V|1|DA|C|635
4V7V|1|DA|G|636
4V7V|1|DA|A|637
4V7V|1|DA|G|638
*
4V7V|1|DA|C|650
4V7V|1|DA|G|651
4V7V|1|DA|U|652
4V7V|1|DA|U|653
4V7V|1|DA|A|654
4V7V|1|DA|A|655
4V7V|1|DA|G|656

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D3

50S ribosomal protein L35

Chain DE

50S ribosomal protein L4

Chain DL

50S ribosomal protein L15