J4_4V7Z_004

3D structure

PDB id

4V7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with telithromycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUGGA*UACAAUG*CCCAGUUCGGAUU*AUGAAGCCGGAAUC

Length

40 nucleotides

Bulged bases

4V7Z|1|AA|A|1238, 4V7Z|1|AA|U|1240, 4V7Z|1|AA|U|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V7Z|1|AA|G|941
4V7Z|1|AA|G|942
4V7Z|1|AA|U|943
4V7Z|1|AA|G|944
4V7Z|1|AA|G|945
4V7Z|1|AA|A|946
*
4V7Z|1|AA|U|1235
4V7Z|1|AA|A|1236
4V7Z|1|AA|C|1237
4V7Z|1|AA|A|1238
4V7Z|1|AA|A|1239
4V7Z|1|AA|U|1240
4V7Z|1|AA|G|1241
*
4V7Z|1|AA|C|1296
4V7Z|1|AA|C|1297
4V7Z|1|AA|C|1298
4V7Z|1|AA|A|1299
4V7Z|1|AA|G|1300
4V7Z|1|AA|U|1301
4V7Z|1|AA|U|1302
4V7Z|1|AA|C|1303
4V7Z|1|AA|G|1304
4V7Z|1|AA|G|1305
4V7Z|1|AA|A|1306
4V7Z|1|AA|U|1307
4V7Z|1|AA|U|1308
*
4V7Z|1|AA|A|1329
4V7Z|1|AA|U|1330
4V7Z|1|AA|G|1331
4V7Z|1|AA|A|1332
4V7Z|1|AA|A|1333
4V7Z|1|AA|G|1334
4V7Z|1|AA|C|1335
4V7Z|1|AA|C|1336
4V7Z|1|AA|G|1337
4V7Z|1|AA|G|1338
4V7Z|1|AA|A|1339
4V7Z|1|AA|A|1340
4V7Z|1|AA|U|1341
4V7Z|1|AA|C|1342

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AI

30S ribosomal protein S9

Chain AM

30S ribosomal protein S13

Chain AU

30S ribosomal protein Thx