J4_4V83_006

3D structure

PDB id

4V83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGUCUAG

Length

20 nucleotides

Bulged bases

4V83|1|BA|A|603, 4V83|1|BA|U|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V83_006 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.537

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

4V83|1|BA|C|601
4V83|1|BA|G|602
4V83|1|BA|A|603
4V83|1|BA|G|604
*
4V83|1|BA|C|624
4V83|1|BA|G|625
4V83|1|BA|U|626
4V83|1|BA|A|627
4V83|1|BA|G|628
*
4V83|1|BA|C|635
4V83|1|BA|G|636
4V83|1|BA|A|637
4V83|1|BA|G|638
*
4V83|1|BA|C|650
4V83|1|BA|G|651
4V83|1|BA|U|652
4V83|1|BA|C|653
4V83|1|BA|U|654
4V83|1|BA|A|655
4V83|1|BA|G|656

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L35

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15