J4_4V84_010

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAC*GC*GGGAAG*UGACAACC

Length

19 nucleotides

Bulged bases

4V84|1|BA|A|144|||B, 4V84|1|BA|C|1544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V84|1|BA|G|1444
4V84|1|BA|A|144|||B
4V84|1|BA|C|1445
*
4V84|1|BA|G|1466
4V84|1|BA|C|1467
*
4V84|1|BA|G|1525
4V84|1|BA|G|1526
4V84|1|BA|G|1527
4V84|1|BA|A|1528
4V84|1|BA|A|1529
4V84|1|BA|G|1530
*
4V84|1|BA|U|1541
4V84|1|BA|G|1542
4V84|1|BA|A|1543
4V84|1|BA|C|1544
4V84|1|BA|A|1545
4V84|1|BA|A|1546
4V84|1|BA|C|154|||B
4V84|1|BA|C|1547

Current chains

Chain BA

23S ribosomal RNA

Nearby chains