J4_4V84_016

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAGG*CCAUGUG*CAAAG*CGC

Length

19 nucleotides

Bulged bases

4V84|1|CA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V84|1|CA|G|142
4V84|1|CA|A|143
4V84|1|CA|G|144
4V84|1|CA|G|145
*
4V84|1|CA|C|177
4V84|1|CA|C|178
4V84|1|CA|A|179
4V84|1|CA|U|180
4V84|1|CA|G|181
4V84|1|CA|U|182
4V84|1|CA|G|183
*
4V84|1|CA|C|194
4V84|1|CA|A|195
4V84|1|CA|A|196
4V84|1|CA|A|197
4V84|1|CA|G|198
*
4V84|1|CA|C|219
4V84|1|CA|G|220
4V84|1|CA|C|221

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CT

30S ribosomal protein S20