J4_4V84_018

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGGA*UACAAUG*CCCAGUUC*GCCGGAA

Length

26 nucleotides

Bulged bases

4V84|1|CA|U|1240, 4V84|1|CA|U|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V84|1|CA|U|943
4V84|1|CA|G|944
4V84|1|CA|G|945
4V84|1|CA|A|946
*
4V84|1|CA|U|1235
4V84|1|CA|A|1236
4V84|1|CA|C|1237
4V84|1|CA|A|1238
4V84|1|CA|A|1239
4V84|1|CA|U|1240
4V84|1|CA|G|1241
*
4V84|1|CA|C|1296
4V84|1|CA|C|1297
4V84|1|CA|C|1298
4V84|1|CA|A|1299
4V84|1|CA|G|1300
4V84|1|CA|U|1301
4V84|1|CA|U|1302
4V84|1|CA|C|1303
*
4V84|1|CA|G|1334
4V84|1|CA|C|1335
4V84|1|CA|C|1336
4V84|1|CA|G|1337
4V84|1|CA|G|1338
4V84|1|CA|A|1339
4V84|1|CA|A|1340

Current chains

Chain CA

ribosomal RNA 16S

Nearby chains

Chain CG

30S ribosomal protein S7

Chain CI

30S ribosomal protein S9

Chain CM

30S ribosomal protein S13

Chain CU

30S ribosomal protein Thx

Chain CV

RNA (34-MER)