J4_4V84_021

3D structure

PDB id

4V84 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGUCUAG

Length

20 nucleotides

Bulged bases

4V84|1|DA|U|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V84_021 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.5414

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

4V84|1|DA|C|601
4V84|1|DA|G|602
4V84|1|DA|A|603
4V84|1|DA|G|604
*
4V84|1|DA|C|624
4V84|1|DA|G|625
4V84|1|DA|U|626
4V84|1|DA|A|627
4V84|1|DA|G|628
*
4V84|1|DA|C|635
4V84|1|DA|G|636
4V84|1|DA|A|637
4V84|1|DA|G|638
*
4V84|1|DA|C|650
4V84|1|DA|G|651
4V84|1|DA|U|652
4V84|1|DA|C|653
4V84|1|DA|U|654
4V84|1|DA|A|655
4V84|1|DA|G|656

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D5

50S ribosomal protein L35

Chain DE

50S ribosomal protein L4

Chain DL

50S ribosomal protein L15