J4_4V85_005

3D structure

PDB id

4V85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V85_005 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0583

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

4V85|1|BA|G|297
4V85|1|BA|G|298
4V85|1|BA|A|299
4V85|1|BA|A|300
4V85|1|BA|G|301
*
4V85|1|BA|C|316
4V85|1|BA|G|317
4V85|1|BA|C|318
4V85|1|BA|G|319
*
4V85|1|BA|C|323
4V85|1|BA|A|324
4V85|1|BA|G|325
*
4V85|1|BA|C|337
4V85|1|BA|G|338
4V85|1|BA|U|339
4V85|1|BA|A|340
4V85|1|BA|C|341

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L4

Chain BY

50S ribosomal protein L24 1