J4_4V85_012

3D structure

PDB id

4V85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Release Factor RF3 Trapped in the GTP State on a Rotated Conformation of the Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

4V85|1|BA|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V85_012 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.11

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V85|1|BA|C|1833
4V85|1|BA|U|1834
4V85|1|BA|G|1835
*
4V85|1|BA|C|1905
4V85|1|BA|G|1906
*
4V85|1|BA|C|1924
4V85|1|BA|C|1925
4V85|1|BA|U|1926
4V85|1|BA|A|1927
4V85|1|BA|A|1928
4V85|1|BA|G|1929
4V85|1|BA|G|1930
4V85|1|BA|U|1931
4V85|1|BA|A|1932
4V85|1|BA|G|1933
*
4V85|1|BA|C|1967
4V85|1|BA|G|1968
4V85|1|BA|A|1969
4V85|1|BA|A|1970
4V85|1|BA|U|1971
4V85|1|BA|G|1972

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AA

16S rRNA

Chain BC

50S ribosomal protein L2