J4_4V87_002
3D structure
- PDB id
- 4V87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAG*CGCC*GAG*CGUAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V87_002 not in the Motif Atlas
- Homologous match to J4_9DFE_002
- Geometric discrepancy: 0.0756
- The information below is about J4_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_16174.1
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V87|1|AA|C|297
4V87|1|AA|G|298
4V87|1|AA|A|299
4V87|1|AA|A|300
4V87|1|AA|G|301
*
4V87|1|AA|C|316
4V87|1|AA|G|317
4V87|1|AA|C|318
4V87|1|AA|C|319
*
4V87|1|AA|G|323
4V87|1|AA|A|324
4V87|1|AA|G|325
*
4V87|1|AA|C|337
4V87|1|AA|G|338
4V87|1|AA|U|339
4V87|1|AA|A|340
4V87|1|AA|G|341
Current chains
- Chain AA
- RNA (2909-MER)
Nearby chains
- Chain AF
- 50S ribosomal protein L4
- Chain AU
- 50S ribosomal protein L24
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