J4_4V87_033

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUGG*CGU*AAGGUCG*CCC

Length

18 nucleotides

Bulged bases

4V87|1|CD|U|48, 4V87|1|CD|C|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V87_033 not in the Motif Atlas

Homologous match to J4_4WT8_030

Geometric discrepancy: 0.4397

The information below is about J4_4WT8_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V87|1|CD|G|6
4V87|1|CD|G|7
4V87|1|CD|U|8
4V87|1|CD|G|9
4V87|1|CD|G|10
*
4V87|1|CD|C|26
4V87|1|CD|G|27
4V87|1|CD|U|28
*
4V87|1|CD|A|44
4V87|1|CD|A|45
4V87|1|CD|G|46
4V87|1|CD|G|47
4V87|1|CD|U|48
4V87|1|CD|C|49
4V87|1|CD|G|50
*
4V87|1|CD|C|66
4V87|1|CD|C|67
4V87|1|CD|C|68

Current chains

Chain CD

TRNA-FMET

Nearby chains

Chain CJ

30S RIBOSOMAL PROTEIN S7

Chain CN

30S RIBOSOMAL PROTEIN S11

Chain D6

50S ribosomal protein L33