J4_4V88_017

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GG*CU*AG*UC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V88_017 not in the Motif Atlas

Homologous match to J4_8P9A_016

Geometric discrepancy: 0.068

The information below is about J4_8P9A_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_24280.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V88|1|A5|G|1674
4V88|1|A5|G|1675
*
4V88|1|A5|C|1693
4V88|1|A5|U|1694
*
4V88|1|A5|A|1752
4V88|1|A5|G|1753
*
4V88|1|A5|U|1772
4V88|1|A5|C|1773

Current chains

Chain A5

25S rRNA

Nearby chains

Chain DU

60S ribosomal protein L22-A

Chain Dg

60S ribosomal protein L34-A

Chain Dk

60S ribosomal protein L38