J4_4V8A_025

3D structure

PDB id

4V8A (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of thermorubin in complex with the 70S ribosome from Thermus thermophilus.

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAG*CAUGUG*CAAAGG*CCGC

Length

19 nucleotides

Bulged bases

4V8A|1|DA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8A|1|DA|G|142
4V8A|1|DA|A|143
4V8A|1|DA|G|144
*
4V8A|1|DA|C|178
4V8A|1|DA|A|179
4V8A|1|DA|U|180
4V8A|1|DA|G|181
4V8A|1|DA|U|182
4V8A|1|DA|G|183
*
4V8A|1|DA|C|194
4V8A|1|DA|A|195
4V8A|1|DA|A|196
4V8A|1|DA|A|197
4V8A|1|DA|G|198
4V8A|1|DA|G|199
*
4V8A|1|DA|C|218
4V8A|1|DA|C|219
4V8A|1|DA|G|220
4V8A|1|DA|C|221

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DT

30S ribosomal protein S20