J4_4V8B_022
3D structure
- PDB id
- 4V8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CGAUAAA*UC*GCGC*GG
- Length
- 15 nucleotides
- Bulged bases
- 4V8B|1|DA|G|1271, 4V8B|1|DA|A|1272, 4V8B|1|DA|U|1273, 4V8B|1|DA|G|1647
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V8B_022 not in the Motif Atlas
- Homologous match to J4_9DFE_003
- Geometric discrepancy: 0.0591
- The information below is about J4_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.5
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V8B|1|DA|C|1270
4V8B|1|DA|G|1271
4V8B|1|DA|A|1272
4V8B|1|DA|U|1273
4V8B|1|DA|A|1274
4V8B|1|DA|A|1275
4V8B|1|DA|A|1276
*
4V8B|1|DA|U|1294
4V8B|1|DA|C|1295
*
4V8B|1|DA|G|1645
4V8B|1|DA|C|1646
4V8B|1|DA|G|1647
4V8B|1|DA|C|1648
*
4V8B|1|DA|G|2009
4V8B|1|DA|G|2010
Current chains
- Chain DA
- RNA (2912-MER)
Nearby chains
- Chain D0
- 50S ribosomal protein L17
- Chain D5
- 50S ribosomal protein L32
- Chain DS
- 50S ribosomal protein L22
Coloring options: