J4_4V8B_023

3D structure

PDB id

4V8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

4V8B|1|DA|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8B_023 not in the Motif Atlas

Homologous match to J4_7A0S_005

Geometric discrepancy: 0.1496

The information below is about J4_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V8B|1|DA|G|1310
4V8B|1|DA|G|1311
4V8B|1|DA|U|1312
4V8B|1|DA|U|1313
4V8B|1|DA|C|1314
*
4V8B|1|DA|G|1338
4V8B|1|DA|G|1339
4V8B|1|DA|U|1340
4V8B|1|DA|U|1341
4V8B|1|DA|A|1342
4V8B|1|DA|G|1343
*
4V8B|1|DA|C|1404
4V8B|1|DA|U|1405
*
4V8B|1|DA|A|1597
4V8B|1|DA|C|1598
4V8B|1|DA|C|1599
4V8B|1|DA|C|1600
4V8B|1|DA|G|1601
4V8B|1|DA|U|1602
4V8B|1|DA|A|1603
4V8B|1|DA|C|1604

Current chains

Chain DA

RNA (2912-MER)

Nearby chains

Chain D7

50S ribosomal protein L34

Chain DT

50S ribosomal protein L23