J4_4V8C_022

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAGG*CCAUGUGGA*UCCAAAG*CGC

Length

23 nucleotides

Bulged bases

4V8C|1|CA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8C|1|CA|G|142
4V8C|1|CA|A|143
4V8C|1|CA|G|144
4V8C|1|CA|G|145
*
4V8C|1|CA|C|177
4V8C|1|CA|C|178
4V8C|1|CA|A|179
4V8C|1|CA|U|180
4V8C|1|CA|G|181
4V8C|1|CA|U|182
4V8C|1|CA|G|183
4V8C|1|CA|G|184
4V8C|1|CA|A|185
*
4V8C|1|CA|U|192
4V8C|1|CA|C|193
4V8C|1|CA|C|194
4V8C|1|CA|A|195
4V8C|1|CA|A|196
4V8C|1|CA|A|197
4V8C|1|CA|G|198
*
4V8C|1|CA|C|219
4V8C|1|CA|G|220
4V8C|1|CA|C|221

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CW

30S RIBOSOMAL PROTEIN S20