J4_4V8C_032

3D structure

PDB id

4V8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGUGG*CGU*AGGUCG*CCC

Length

17 nucleotides

Bulged bases

4V8C|1|DD|U|48, 4V8C|1|DD|C|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8C|1|DD|G|6
4V8C|1|DD|G|7
4V8C|1|DD|U|8
4V8C|1|DD|G|9
4V8C|1|DD|G|10
*
4V8C|1|DD|C|26
4V8C|1|DD|G|27
4V8C|1|DD|U|28
*
4V8C|1|DD|A|45
4V8C|1|DD|G|46
4V8C|1|DD|G|47
4V8C|1|DD|U|48
4V8C|1|DD|C|49
4V8C|1|DD|G|50
*
4V8C|1|DD|C|66
4V8C|1|DD|C|67
4V8C|1|DD|C|68

Current chains

Chain DD

TRNA-FMET

Nearby chains

Chain B6

50S ribosomal protein L33

Chain DN

30S RIBOSOMAL PROTEIN S11