J4_4V8F_012

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AGAG*CAUGUG*CAAAG*CGCU

Length

19 nucleotides

Bulged bases

4V8F|1|BA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8F|1|BA|A|141
4V8F|1|BA|G|142
4V8F|1|BA|A|143
4V8F|1|BA|G|144
*
4V8F|1|BA|C|178
4V8F|1|BA|A|179
4V8F|1|BA|U|180
4V8F|1|BA|G|181
4V8F|1|BA|U|182
4V8F|1|BA|G|183
*
4V8F|1|BA|C|194
4V8F|1|BA|A|195
4V8F|1|BA|A|196
4V8F|1|BA|A|197
4V8F|1|BA|G|198
*
4V8F|1|BA|C|219
4V8F|1|BA|G|220
4V8F|1|BA|C|221
4V8F|1|BA|U|222

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BW

30S RIBOSOMAL PROTEIN S20