J4_4V8F_014

3D structure

PDB id

4V8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUCCCGAGCGGCCAAAGGGAG*CCG*CUUCG*CC

Length

32 nucleotides

Bulged bases

4V8F|1|BB|G|17, 4V8F|1|BB|G|18, 4V8F|1|BB|C|19

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8F|1|BB|G|7
4V8F|1|BB|U|8
4V8F|1|BB|U|9
4V8F|1|BB|C|10
4V8F|1|BB|C|11
4V8F|1|BB|C|12
4V8F|1|BB|G|13
4V8F|1|BB|A|14
4V8F|1|BB|G|15
4V8F|1|BB|C|16
4V8F|1|BB|G|17
4V8F|1|BB|G|18
4V8F|1|BB|C|19
4V8F|1|BB|C|20
4V8F|1|BB|A|21
4V8F|1|BB|A|22
4V8F|1|BB|A|23
4V8F|1|BB|G|24
4V8F|1|BB|G|25
4V8F|1|BB|G|26
4V8F|1|BB|A|27
4V8F|1|BB|G|28
*
4V8F|1|BB|C|44
4V8F|1|BB|C|45
4V8F|1|BB|G|46
*
4V8F|1|BB|C|54
4V8F|1|BB|U|55
4V8F|1|BB|U|56
4V8F|1|BB|C|57
4V8F|1|BB|G|58
*
4V8F|1|BB|C|74
4V8F|1|BB|C|75

Current chains

Chain BB

TRNA-TYR

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA