J4_4V8H_017

3D structure

PDB id

4V8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of HPF bound to the 70S ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGGA*UACAAUGC*GCCCAGUUC*GCCGGAA

Length

28 nucleotides

Bulged bases

4V8H|1|CA|A|1238, 4V8H|1|CA|U|1240, 4V8H|1|CA|C|1297, 4V8H|1|CA|U|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8H|1|CA|U|943
4V8H|1|CA|G|944
4V8H|1|CA|G|945
4V8H|1|CA|A|946
*
4V8H|1|CA|U|1235
4V8H|1|CA|A|1236
4V8H|1|CA|C|1237
4V8H|1|CA|A|1238
4V8H|1|CA|A|1239
4V8H|1|CA|U|1240
4V8H|1|CA|G|1241
4V8H|1|CA|C|1242
*
4V8H|1|CA|G|1295
4V8H|1|CA|C|1296
4V8H|1|CA|C|1297
4V8H|1|CA|C|1298
4V8H|1|CA|A|1299
4V8H|1|CA|G|1300
4V8H|1|CA|U|1301
4V8H|1|CA|U|1302
4V8H|1|CA|C|1303
*
4V8H|1|CA|G|1334
4V8H|1|CA|C|1335
4V8H|1|CA|C|1336
4V8H|1|CA|G|1337
4V8H|1|CA|G|1338
4V8H|1|CA|A|1339
4V8H|1|CA|A|1340

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CG

30S Ribosomal Protein S7

Chain CI

30S Ribosomal Protein S9

Chain CM

30S Ribosomal Protein S13

Chain CU

30S Ribosomal Protein THX

Chain CX

Probable sigma(54) modulation protein