J4_4V8N_003
3D structure
- PDB id
- 4V8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUAGCU*AGCG*UGGGCGC*GCAG
- Length
- 22 nucleotides
- Bulged bases
- 4V8N|1|AV|U|8, 4V8N|1|AV|G|49, 4V8N|1|AV|C|50
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V8N_003 not in the Motif Atlas
- Homologous match to J4_4V8N_018
- Geometric discrepancy: 0.0085
- The information below is about J4_4V8N_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V8N|1|AV|C|6
4V8N|1|AV|U|7
4V8N|1|AV|U|8
4V8N|1|AV|A|9
4V8N|1|AV|G|10
4V8N|1|AV|C|11
4V8N|1|AV|U|12
*
4V8N|1|AV|A|25
4V8N|1|AV|G|26
4V8N|1|AV|C|27
4V8N|1|AV|G|28
*
4V8N|1|AV|U|46
4V8N|1|AV|G|47
4V8N|1|AV|G|48
4V8N|1|AV|G|49
4V8N|1|AV|C|50
4V8N|1|AV|G|51
4V8N|1|AV|C|52
*
4V8N|1|AV|G|66
4V8N|1|AV|C|67
4V8N|1|AV|A|68
4V8N|1|AV|G|69
Current chains
- Chain AV
- E-SITE TRNA ILE2 AGMATIDINE OR P-SITE TRNA ILE2 AGMATIDINE
Nearby chains
- Chain AM
- 30S RIBOSOMAL PROTEIN S13
- Chain AY
- Transfer RNA; tRNA
- Chain B0
- 50S RIBOSOMAL PROTEIN L27
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BQ
- 50S RIBOSOMAL PROTEIN L16
Coloring options: