J4_4V8N_007

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAG*CGUAG*CGAG*CGCAAGCGGGCCGCACGCGGCCCGCAAAG

Length

42 nucleotides

Bulged bases

4V8N|1|BA|A|654, 4V8N|1|BA|C|654|||B, 4V8N|1|BA|G|654|||H, 4V8N|1|BA|C|654|||I, 4V8N|1|BA|A|654|||J, 4V8N|1|BA|C|654|||K, 4V8N|1|BA|G|654|||L, 4V8N|1|BA|C|654|||M, 4V8N|1|BA|G|654|||N, 4V8N|1|BA|G|654|||S

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8N|1|BA|C|601
4V8N|1|BA|G|602
4V8N|1|BA|A|603
4V8N|1|BA|G|604
*
4V8N|1|BA|C|624
4V8N|1|BA|G|625
4V8N|1|BA|U|626
4V8N|1|BA|A|627
4V8N|1|BA|G|628
*
4V8N|1|BA|C|635
4V8N|1|BA|G|636
4V8N|1|BA|A|637
4V8N|1|BA|G|638
*
4V8N|1|BA|C|650
4V8N|1|BA|G|651
4V8N|1|BA|C|652
4V8N|1|BA|A|653
4V8N|1|BA|A|654
4V8N|1|BA|G|654|||A
4V8N|1|BA|C|654|||B
4V8N|1|BA|G|654|||C
4V8N|1|BA|G|654|||D
4V8N|1|BA|G|654|||E
4V8N|1|BA|C|654|||F
4V8N|1|BA|C|654|||G
4V8N|1|BA|G|654|||H
4V8N|1|BA|C|654|||I
4V8N|1|BA|A|654|||J
4V8N|1|BA|C|654|||K
4V8N|1|BA|G|654|||L
4V8N|1|BA|C|654|||M
4V8N|1|BA|G|654|||N
4V8N|1|BA|G|654|||O
4V8N|1|BA|C|654|||P
4V8N|1|BA|C|654|||Q
4V8N|1|BA|C|654|||R
4V8N|1|BA|G|654|||S
4V8N|1|BA|C|654|||T
4V8N|1|BA|A|654|||U
4V8N|1|BA|A|654|||V
4V8N|1|BA|A|655
4V8N|1|BA|G|656

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B8

50S RIBOSOMAL PROTEIN L35

Chain BF

50S RIBOSOMAL PROTEIN L4

Chain BP

50S RIBOSOMAL PROTEIN L15