J4_4V8N_021

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8N_021 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0815

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

4V8N|1|DA|C|297
4V8N|1|DA|G|298
4V8N|1|DA|A|299
4V8N|1|DA|A|300
4V8N|1|DA|G|301
*
4V8N|1|DA|C|316
4V8N|1|DA|G|317
4V8N|1|DA|C|318
4V8N|1|DA|C|319
*
4V8N|1|DA|G|323
4V8N|1|DA|A|324
4V8N|1|DA|G|325
*
4V8N|1|DA|C|337
4V8N|1|DA|G|338
4V8N|1|DA|U|339
4V8N|1|DA|A|340
4V8N|1|DA|G|341

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DF

50S RIBOSOMAL PROTEIN L4

Chain DY

50S RIBOSOMAL PROTEIN L24