J4_4V8N_027

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8N_027 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.058

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V8N|1|DA|G|1772
4V8N|1|DA|A|1773
4V8N|1|DA|C|1774
4V8N|1|DA|U|1775
4V8N|1|DA|G|1776
*
4V8N|1|DA|C|1788
4V8N|1|DA|A|1789
4V8N|1|DA|C|1790
4V8N|1|DA|A|1791
4V8N|1|DA|G|1792
*
4V8N|1|DA|C|1827
4V8N|1|DA|G|1828
4V8N|1|DA|A|1829
4V8N|1|DA|C|1830
*
4V8N|1|DA|G|1975
4V8N|1|DA|U|1976
4V8N|1|DA|A|1977
4V8N|1|DA|A|1978
4V8N|1|DA|C|1979

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DD

50S RIBOSOMAL PROTEIN L2