J4_4V8N_028

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

4V8N|1|DA|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8N_028 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0712

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V8N|1|DA|U|1833
4V8N|1|DA|U|1834
4V8N|1|DA|G|1835
*
4V8N|1|DA|C|1905
4V8N|1|DA|G|1906
*
4V8N|1|DA|C|1924
4V8N|1|DA|C|1925
4V8N|1|DA|U|1926
4V8N|1|DA|A|1927
4V8N|1|DA|A|1928
4V8N|1|DA|G|1929
4V8N|1|DA|G|1930
4V8N|1|DA|U|1931
4V8N|1|DA|A|1932
4V8N|1|DA|G|1933
*
4V8N|1|DA|C|1967
4V8N|1|DA|G|1968
4V8N|1|DA|A|1969
4V8N|1|DA|A|1970
4V8N|1|DA|A|1971
4V8N|1|DA|A|1972

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain CV

Transfer RNA; tRNA

Chain DD

50S RIBOSOMAL PROTEIN L2