J4_4V8O_003

3D structure

PDB id

4V8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

CGUAAAGGG*CGAAAG*CCCUAAACGAUGC*GCCG

Length

32 nucleotides

Bulged bases

4V8O|1|AA|A|572, 4V8O|1|AA|G|576

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8O|1|AA|C|569
4V8O|1|AA|G|570
4V8O|1|AA|U|571
4V8O|1|AA|A|572
4V8O|1|AA|A|573
4V8O|1|AA|A|574
4V8O|1|AA|G|575
4V8O|1|AA|G|576
4V8O|1|AA|G|577
*
4V8O|1|AA|C|764
4V8O|1|AA|G|765
4V8O|1|AA|A|766
4V8O|1|AA|A|767
4V8O|1|AA|A|768
4V8O|1|AA|G|769
*
4V8O|1|AA|C|810
4V8O|1|AA|C|811
4V8O|1|AA|C|812
4V8O|1|AA|U|813
4V8O|1|AA|A|814
4V8O|1|AA|A|815
4V8O|1|AA|A|816
4V8O|1|AA|C|817
4V8O|1|AA|G|818
4V8O|1|AA|A|819
4V8O|1|AA|U|820
4V8O|1|AA|G|821
4V8O|1|AA|C|822
*
4V8O|1|AA|G|878
4V8O|1|AA|C|879
4V8O|1|AA|C|880
4V8O|1|AA|G|881

Current chains

Chain AA

16S RRNA

Nearby chains

Chain AH

30S RIBOSOMAL PROTEIN S8

Chain AL

30S RIBOSOMAL PROTEIN S12

Chain AO

30S RIBOSOMAL PROTEIN S15

Chain AQ

30S RIBOSOMAL PROTEIN S17

Chain BA

Large subunit ribosomal RNA; LSU rRNA