J4_4V8O_018

3D structure

PDB id

4V8O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3

Experimental method

X-RAY DIFFRACTION

Resolution

3.8 Å

Loop

Sequence

AUGAGUAACGAUAAA*UC*GCGC*GGUGAAAUU

Length

30 nucleotides

Bulged bases

4V8O|1|BA|G|1271, 4V8O|1|BA|A|1272, 4V8O|1|BA|U|1273, 4V8O|1|BA|A|1274, 4V8O|1|BA|A|1275, 4V8O|1|BA|C|1646, 4V8O|1|BA|G|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8O|1|BA|A|1262
4V8O|1|BA|U|1263
4V8O|1|BA|G|1264
4V8O|1|BA|A|1265
4V8O|1|BA|G|1266
4V8O|1|BA|U|1267
4V8O|1|BA|A|1268
4V8O|1|BA|A|1269
4V8O|1|BA|C|1270
4V8O|1|BA|G|1271
4V8O|1|BA|A|1272
4V8O|1|BA|U|1273
4V8O|1|BA|A|1274
4V8O|1|BA|A|1275
4V8O|1|BA|A|1276
*
4V8O|1|BA|U|1294
4V8O|1|BA|C|1295
*
4V8O|1|BA|G|1645
4V8O|1|BA|C|1646
4V8O|1|BA|G|1647
4V8O|1|BA|C|1648
*
4V8O|1|BA|G|2009
4V8O|1|BA|G|2010
4V8O|1|BA|U|2011
4V8O|1|BA|G|2012
4V8O|1|BA|A|2013
4V8O|1|BA|A|2014
4V8O|1|BA|A|2015
4V8O|1|BA|U|2016
4V8O|1|BA|U|2017

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B5

50S RIBOSOMAL PROTEIN L32

Chain BF

50S RIBOSOMAL PROTEIN L4

Chain BR

50S RIBOSOMAL PROTEIN L17

Chain BW

50S RIBOSOMAL PROTEIN L22