Loop J4_4V8Q

3D structure

PDB id: 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
Description: Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å

Loop

Sequence: CGAG*CGUAG*CGAG*CGCAAGCGGGCCGCACGCGGCCCGCAAAG
Length: 42 nucleotides
Bulged bases: 4V8Q|1|AA|A|654, 4V8Q|1|AA|C|654|||I, 4V8Q|1|AA|A|654|||J, 4V8Q|1|AA|C|654|||K, 4V8Q|1|AA|G|654|||L
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V8Q|1|AA|C|601
4V8Q|1|AA|G|602
4V8Q|1|AA|A|603
4V8Q|1|AA|G|604
*
4V8Q|1|AA|C|624
4V8Q|1|AA|G|625
4V8Q|1|AA|U|626
4V8Q|1|AA|A|627
4V8Q|1|AA|G|628
*
4V8Q|1|AA|C|635
4V8Q|1|AA|G|636
4V8Q|1|AA|A|637
4V8Q|1|AA|G|638
*
4V8Q|1|AA|C|650
4V8Q|1|AA|G|651
4V8Q|1|AA|C|652
4V8Q|1|AA|A|653
4V8Q|1|AA|A|654
4V8Q|1|AA|G|654|||A
4V8Q|1|AA|C|654|||B
4V8Q|1|AA|G|654|||C
4V8Q|1|AA|G|654|||D
4V8Q|1|AA|G|654|||E
4V8Q|1|AA|C|654|||F
4V8Q|1|AA|C|654|||G
4V8Q|1|AA|G|654|||H
4V8Q|1|AA|C|654|||I
4V8Q|1|AA|A|654|||J
4V8Q|1|AA|C|654|||K
4V8Q|1|AA|G|654|||L
4V8Q|1|AA|C|654|||M
4V8Q|1|AA|G|654|||N
4V8Q|1|AA|G|654|||O
4V8Q|1|AA|C|654|||P
4V8Q|1|AA|C|654|||Q
4V8Q|1|AA|C|654|||R
4V8Q|1|AA|G|654|||S
4V8Q|1|AA|C|654|||T
4V8Q|1|AA|A|654|||U
4V8Q|1|AA|A|654|||V
4V8Q|1|AA|A|655
4V8Q|1|AA|G|656

Current chains

Chain AA: 23S ribosomal RNA

Nearby chains

Chain A8: 50S RIBOSOMAL PROTEIN L35
Chain AF: 50S RIBOSOMAL PROTEIN L4
Chain AP: 50S RIBOSOMAL PROTEIN L15

J4_4V8Q_003