J4_4V8Q_009

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

4V8Q|1|AA|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8Q_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0648

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V8Q|1|AA|U|1833
4V8Q|1|AA|U|1834
4V8Q|1|AA|G|1835
*
4V8Q|1|AA|C|1905
4V8Q|1|AA|G|1906
*
4V8Q|1|AA|C|1924
4V8Q|1|AA|C|1925
4V8Q|1|AA|U|1926
4V8Q|1|AA|A|1927
4V8Q|1|AA|A|1928
4V8Q|1|AA|G|1929
4V8Q|1|AA|G|1930
4V8Q|1|AA|U|1931
4V8Q|1|AA|A|1932
4V8Q|1|AA|G|1933
*
4V8Q|1|AA|C|1967
4V8Q|1|AA|G|1968
4V8Q|1|AA|A|1969
4V8Q|1|AA|A|1970
4V8Q|1|AA|A|1971
4V8Q|1|AA|A|1972

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AD

50S RIBOSOMAL PROTEIN L2

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain BV

Transfer RNA; tRNA