J4_4V8X_021
3D structure
- PDB id
- 4V8X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Thermus thermophilus ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- GGUGGA*UACAAUG*CCCAGUUC*GCCGGAAUC
- Length
- 30 nucleotides
- Bulged bases
- 4V8X|1|CA|U|1240, 4V8X|1|CA|U|1302, 4V8X|1|CA|C|1336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V8X|1|CA|G|941
4V8X|1|CA|G|942
4V8X|1|CA|U|943
4V8X|1|CA|G|944
4V8X|1|CA|G|945
4V8X|1|CA|A|946
*
4V8X|1|CA|U|1235
4V8X|1|CA|A|1236
4V8X|1|CA|C|1237
4V8X|1|CA|A|1238
4V8X|1|CA|A|1239
4V8X|1|CA|U|1240
4V8X|1|CA|G|1241
*
4V8X|1|CA|C|1296
4V8X|1|CA|C|1297
4V8X|1|CA|C|1298
4V8X|1|CA|A|1299
4V8X|1|CA|G|1300
4V8X|1|CA|U|1301
4V8X|1|CA|U|1302
4V8X|1|CA|C|1303
*
4V8X|1|CA|G|1334
4V8X|1|CA|C|1335
4V8X|1|CA|C|1336
4V8X|1|CA|G|1337
4V8X|1|CA|G|1338
4V8X|1|CA|A|1339
4V8X|1|CA|A|1340
4V8X|1|CA|U|1341
4V8X|1|CA|C|1342
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain CG
- 30S RIBOSOMAL PROTEIN S7
- Chain CI
- 30S RIBOSOMAL PROTEIN S9
- Chain CM
- 30S RIBOSOMAL PROTEIN S13
- Chain CU
- 30S RIBOSOMAL PROTEIN THX
- Chain CV
- Transfer RNA; tRNA
- Chain CW
- Transfer RNA; tRNA
Coloring options: