J4_4V8X_034
3D structure
- PDB id
- 4V8X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Thermus thermophilus ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- GGGGUGG*CGU*AAGGUCGUCGG*CCGGCCCCC
- Length
- 30 nucleotides
- Bulged bases
- 4V8X|1|AW|U|47, 4V8X|1|AW|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V8X|1|AW|G|4
4V8X|1|AW|G|5
4V8X|1|AW|G|6
4V8X|1|AW|G|7
4V8X|1|AW|U|8
4V8X|1|AW|G|9
4V8X|1|AW|G|10
*
4V8X|1|AW|C|25
4V8X|1|AW|G|26
4V8X|1|AW|U|27
*
4V8X|1|AW|A|43
4V8X|1|AW|A|44
4V8X|1|AW|G|45
4V8X|1|AW|G|46
4V8X|1|AW|U|47
4V8X|1|AW|C|48
4V8X|1|AW|G|49
4V8X|1|AW|U|50
4V8X|1|AW|C|51
4V8X|1|AW|G|52
4V8X|1|AW|G|53
*
4V8X|1|AW|C|61
4V8X|1|AW|C|62
4V8X|1|AW|G|63
4V8X|1|AW|G|64
4V8X|1|AW|C|65
4V8X|1|AW|C|66
4V8X|1|AW|C|67
4V8X|1|AW|C|68
4V8X|1|AW|C|69
Current chains
- Chain AW
- transfer RNA
Nearby chains
- Chain AG
- 30S RIBOSOMAL PROTEIN S7
- Chain AK
- 30S RIBOSOMAL PROTEIN S11
- Chain B6
- 50S RIBOSOMAL PROTEIN L33
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BC
- 50S RIBOSOMAL PROTEIN L1
Coloring options: