J4_4V8Y_008

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GG*CU*AG*UC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8Y_008 not in the Motif Atlas

Homologous match to J4_8P9A_016

Geometric discrepancy: 0.068

The information below is about J4_8P9A_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75575.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V8Y|1|B5|G|1674
4V8Y|1|B5|G|1675
*
4V8Y|1|B5|C|1693
4V8Y|1|B5|U|1694
*
4V8Y|1|B5|A|1752
4V8Y|1|B5|G|1753
*
4V8Y|1|B5|U|1772
4V8Y|1|B5|C|1773

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BU

60S RIBOSOMAL PROTEIN L22-A

Chain Bg

60S RIBOSOMAL PROTEIN L34-A

Chain Bk

60S RIBOSOMAL PROTEIN L38