J4_4V8Y_011

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CUAAG*UUG*CC*GUG

Length

13 nucleotides

Bulged bases

4V8Y|1|B5|A|2657

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8Y|1|B5|C|2654
4V8Y|1|B5|U|2655
4V8Y|1|B5|A|2656
4V8Y|1|B5|A|2657
4V8Y|1|B5|G|2658
*
4V8Y|1|B5|U|2712
4V8Y|1|B5|U|2713
4V8Y|1|B5|G|2714
*
4V8Y|1|B5|C|2741
4V8Y|1|B5|C|2742
*
4V8Y|1|B5|G|2751
4V8Y|1|B5|U|2752
4V8Y|1|B5|G|2753

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain A7

SUPPRESSOR PROTEIN STM1

Chain BD

60S RIBOSOMAL PROTEIN L5

Chain BT

60S RIBOSOMAL PROTEIN L21-A

Chain Bo

60S RIBOSOMAL PROTEIN L42-A