J4_4V8Y_014

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

AUAG*CAGG*CCGUGUCC*GU

Length

18 nucleotides

Bulged bases

4V8Y|1|CW|U|8, 4V8Y|1|CW|U|47, 4V8Y|1|CW|C|48

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V8Y_014 not in the Motif Atlas

Homologous match to J4_7E8O_001

Geometric discrepancy: 0.28

The information below is about J4_7E8O_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8Y|1|CW|A|7
4V8Y|1|CW|U|8
4V8Y|1|CW|A|9
4V8Y|1|CW|G|10
*
4V8Y|1|CW|C|25
4V8Y|1|CW|A|26
4V8Y|1|CW|G|27
4V8Y|1|CW|G|28
*
4V8Y|1|CW|C|42
4V8Y|1|CW|C|43
4V8Y|1|CW|G|44
4V8Y|1|CW|U|45
4V8Y|1|CW|G|46
4V8Y|1|CW|U|47
4V8Y|1|CW|C|48
4V8Y|1|CW|C|49
*
4V8Y|1|CW|G|65
4V8Y|1|CW|U|66

Current chains

Chain CW

EUKARYOTIC RIBOSOMAL P_E TRNA

Nearby chains

Chain A7

SUPPRESSOR PROTEIN STM1

Chain B2

Small subunit ribosomal RNA; SSU rRNA

Chain Bo

60S RIBOSOMAL PROTEIN L42-A