3D structure

PDB id
4V90 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
CGAAG*CGCC*GAG*CGUAG
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V90_006 not in the Motif Atlas
Homologous match to J4_9DFE_002
Geometric discrepancy: 0.064
The information below is about J4_9DFE_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_71729.5
Basepair signature
cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
Number of instances in this motif group
4

Unit IDs

4V90|1|BA|C|297
4V90|1|BA|G|298
4V90|1|BA|A|299
4V90|1|BA|A|300
4V90|1|BA|G|301
*
4V90|1|BA|C|316
4V90|1|BA|G|317
4V90|1|BA|C|318
4V90|1|BA|C|319
*
4V90|1|BA|G|323
4V90|1|BA|A|324
4V90|1|BA|G|325
*
4V90|1|BA|C|337
4V90|1|BA|G|338
4V90|1|BA|U|339
4V90|1|BA|A|340
4V90|1|BA|G|341

Current chains

Chain BA
23S RIBOSOMAL RNA

Nearby chains

Chain BF
50S RIBOSOMAL PROTEIN L4
Chain BY
50S RIBOSOMAL PROTEIN L24

Coloring options:


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