J4_4V90_013

3D structure

PDB id

4V90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

4V90|1|BA|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V90_013 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.3869

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V90|1|BA|U|1833
4V90|1|BA|U|1834
4V90|1|BA|G|1835
*
4V90|1|BA|C|1905
4V90|1|BA|G|1906
*
4V90|1|BA|C|1924
4V90|1|BA|C|1925
4V90|1|BA|U|1926
4V90|1|BA|A|1927
4V90|1|BA|A|1928
4V90|1|BA|G|1929
4V90|1|BA|G|1930
4V90|1|BA|U|1931
4V90|1|BA|A|1932
4V90|1|BA|G|1933
*
4V90|1|BA|C|1967
4V90|1|BA|G|1968
4V90|1|BA|A|1969
4V90|1|BA|A|1970
4V90|1|BA|A|1971
4V90|1|BA|A|1972

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AV

Transfer RNA; tRNA

Chain BD

50S RIBOSOMAL PROTEIN L2