J4_4V97_024

3D structure

PDB id

4V97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G299A.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

4V97|1|DA|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V97_024 not in the Motif Atlas

Homologous match to J4_4WF9_006

Geometric discrepancy: 0.1056

The information below is about J4_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V97|1|DA|U|1313
4V97|1|DA|C|1314
*
4V97|1|DA|G|1338
4V97|1|DA|G|1339
4V97|1|DA|U|1340
4V97|1|DA|U|1341
4V97|1|DA|A|1342
4V97|1|DA|G|1343
*
4V97|1|DA|C|1404
4V97|1|DA|U|1405
*
4V97|1|DA|A|1597
4V97|1|DA|C|1598
4V97|1|DA|C|1599
4V97|1|DA|C|1600
4V97|1|DA|G|1601
4V97|1|DA|U|1602
4V97|1|DA|A|1603

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D7

50S RIBOSOMAL PROTEIN L34

Chain DX

50S RIBOSOMAL PROTEIN L23