J4_4V9B_005

3D structure

PDB id

4V9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tigecycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGG*CGU*AAGGUCG*CC

Length

16 nucleotides

Bulged bases

4V9B|1|AD|U|47, 4V9B|1|AD|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9B_005 not in the Motif Atlas

Homologous match to J4_6UGG_002

Geometric discrepancy: 0.2758

The information below is about J4_6UGG_002

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_58311.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

30

Unit IDs

4V9B|1|AD|G|7
4V9B|1|AD|U|8
4V9B|1|AD|G|9
4V9B|1|AD|G|10
*
4V9B|1|AD|C|25
4V9B|1|AD|G|26
4V9B|1|AD|U|27
*
4V9B|1|AD|A|43
4V9B|1|AD|A|44
4V9B|1|AD|G|45
4V9B|1|AD|G|46
4V9B|1|AD|U|47
4V9B|1|AD|C|48
4V9B|1|AD|G|49
*
4V9B|1|AD|C|65
4V9B|1|AD|C|66

Current chains

Chain AD

TRNA-FMET

Nearby chains

Chain AJ

30S RIBOSOMAL PROTEIN S7

Chain AN

30S RIBOSOMAL PROTEIN S11