J4_4V9D_008

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGGA*UACAAUG*CGUAGUCCGGAUU*AUGAAGUCGGAA

Length

36 nucleotides

Bulged bases

4V9D|1|BA|U|1240, 4V9D|1|BA|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9D|1|BA|U|943
4V9D|1|BA|G|944
4V9D|1|BA|G|945
4V9D|1|BA|A|946
*
4V9D|1|BA|U|1235
4V9D|1|BA|A|1236
4V9D|1|BA|C|1237
4V9D|1|BA|A|1238
4V9D|1|BA|A|1239
4V9D|1|BA|U|1240
4V9D|1|BA|G|1241
*
4V9D|1|BA|C|1296
4V9D|1|BA|G|1297
4V9D|1|BA|U|1298
4V9D|1|BA|A|1299
4V9D|1|BA|G|1300
4V9D|1|BA|U|1301
4V9D|1|BA|C|1302
4V9D|1|BA|C|1303
4V9D|1|BA|G|1304
4V9D|1|BA|G|1305
4V9D|1|BA|A|1306
4V9D|1|BA|U|1307
4V9D|1|BA|U|1308
*
4V9D|1|BA|A|1329
4V9D|1|BA|U|1330
4V9D|1|BA|G|1331
4V9D|1|BA|A|1332
4V9D|1|BA|A|1333
4V9D|1|BA|G|1334
4V9D|1|BA|U|1335
4V9D|1|BA|C|1336
4V9D|1|BA|G|1337
4V9D|1|BA|G|1338
4V9D|1|BA|A|1339
4V9D|1|BA|A|1340

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BG

30S ribosomal protein S7

Chain BI

30S ribosomal protein S9

Chain BM

30S ribosomal protein S13

Chain BV

Transfer RNA; tRNA