J4_4V9D_018

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

4V9D|1|CA|C|1925, 4V9D|1|CA|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9D_018 not in the Motif Atlas

Homologous match to J4_5J7L_026

Geometric discrepancy: 0.3833

The information below is about J4_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

4V9D|1|CA|C|1833
4V9D|1|CA|U|1834
4V9D|1|CA|G|1835
*
4V9D|1|CA|C|1905
4V9D|1|CA|G|1906
*
4V9D|1|CA|C|1924
4V9D|1|CA|C|1925
4V9D|1|CA|U|1926
4V9D|1|CA|A|1927
4V9D|1|CA|A|1928
4V9D|1|CA|G|1929
4V9D|1|CA|G|1930
4V9D|1|CA|U|1931
4V9D|1|CA|A|1932
4V9D|1|CA|G|1933
*
4V9D|1|CA|C|1967
4V9D|1|CA|G|1968
4V9D|1|CA|A|1969
4V9D|1|CA|A|1970
4V9D|1|CA|U|1971
4V9D|1|CA|G|1972

Current chains

Chain CA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AV

Transfer RNA; tRNA

Chain CC

50S ribosomal protein L2