J4_4V9D_022

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V9D_022 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1614

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

4V9D|1|DA|C|601
4V9D|1|DA|A|602
4V9D|1|DA|A|603
4V9D|1|DA|G|604
*
4V9D|1|DA|C|624
4V9D|1|DA|G|625
4V9D|1|DA|A|626
4V9D|1|DA|A|627
4V9D|1|DA|G|628
*
4V9D|1|DA|C|635
4V9D|1|DA|G|636
4V9D|1|DA|A|637
4V9D|1|DA|G|638
*
4V9D|1|DA|C|650
4V9D|1|DA|G|651
4V9D|1|DA|U|652
4V9D|1|DA|U|653
4V9D|1|DA|A|654
4V9D|1|DA|A|655
4V9D|1|DA|G|656

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D3

50S ribosomal protein L35

Chain DE

50S ribosomal protein L4

Chain DL

50S ribosomal protein L15